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Cover image for Quantitative proteomics by mass spectrometry
Title:
Quantitative proteomics by mass spectrometry
Series:
Methods in molecular biology, 359
Publication Information:
Totowa, NJ : Humana Press, 2007
ISBN:
9781588295712

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30000010149427 QP519.9.M3 Q82 2007 Open Access Book Book
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Summary

Summary

Quantitative Proteomics by Mass Spectrometry, from the Methods in Molecular Biology(tm) series, is a compendium of cutting-edge protocols for quantitative proteomics, and presents the most significant methods used in the field today. The focus on mass spectrometry (MS) is integral, as MS has, and will continue to be, an essential tool in proteomics for studying complex biological systems and human diseases. This volume, written and compiled by leading quantitative proteomic experts, is an indispensable resource in the search for novel biomarkers.

Quantitative Proteomics by Mass Spectrometry presents several innovative MS quantitative procedures, including a variety of methods for introducing isotopic labels and quantifying post-translational modifications. Some of these methods include growing an organism in isotope-enriched media, performing trypsin proteolysis in the presence of 18O-water, reacting protein samples with isotopically labeled reagents, quantifying relative amount of proteins without the use of any isotopic labels. Attention is also given to state-of-the-art techniques for the characterization of the phosphoproteome and tandem MS for detection of inborn errors of metabolism. Specifically, the procedure for determinations of enzymatic activity could be used for large-scale screening of newborns. The protocols in this volume expand both the breadth and depth of readily available methods for quantitative proteomic researchers using MS..



Table of Contents

Illarion V. Turko and Salvatore SechiJeffrey A. Ranish and Marjorie Brand and Ruedi AebersoldShao-En Ong and Matthias MannToshitaka Sato and Yasushi Ishihama and Yoshiya OdaScott A. Gerber and Arminja N. Kettenbach and John Rush and Steven P. GygiSushmita Mimi Roy and Christopher H. BeckerTao Liu and Wei-Jun Qian and David G. Camp, II and Richard D. SmithFred E. RegnierCatherine Fenselau and Xudong YaoFrantisek Turecek and C. Ronald Scott and Michael H. GelbYu Lu and Patricia Bottari and Ruedi Aebersold and Frantisek Turecek and Michael H. GelbMichael J. MacCoss and Christine C. WuChristine C. Wu and Michael J. MacCossYi Zhang and Alejandro Wolf-Yadlin and Forest M. White
Prefacep. v
Contributorsp. ix
1 Acrylamide-A Cysteine Alkylating Reagent for Quantitative Proteomicsp. 1
2 Using Stable Isotope Tagging and Mass Spectrometry to Characterize Protein Complexes and to Detect Changes in Their Compositionp. 17
3 Stable Isotope Labeling by Amino Acids in Cell Culture for Quantitative Proteomicsp. 37
4 Quantitative Proteomics of Mouse Brain and Specific Protein-Interaction Studies Using Stable Isotope Labelingp. 53
5 The Absolute Quantification Strategy: Application to Phosphorylation Profiling of Human Separase Serine 1126p. 71
6 Quantification of Proteins and Metabolites by Mass Spectrometry Without Isotopic Labelingp. 87
7 The Use of a Quantitative Cysteinyl-Peptide Enrichment Technology for High-Throughput Quantitative Proteomicsp. 107
8 An Isotope Coding Strategy for Proteomics Involving Both Amine and Carboxyl Group Labelingp. 125
9 Proteolytic Labeling With [superscript 18]O for Comparative Proteomics Studies: Preparation of [superscript 18]O-Labeled Peptides and the [superscript 18]O/[superscript 16]O Peptide Mixturep. 135
10 Tandem Mass Spectrometry in the Detection of Inborn Errors of Metabolism for Newborn Screeningp. 143
11 Absolute Quantification of Specific Proteins in Complex Mixtures Using Visible Isotope-Coded Affinity Tagsp. 159
12 Computational Analysis of Quantitative Proteomics Data Using Stable Isotope Labelingp. 177
13 Quantitative Proteomic Analysis of Mammalian Organisms Using Metabolically Labeled Tissuesp. 191
14 Quantitative Proteomic Analysis of Phosphotyrosine-Mediated Cellular Signaling Networksp. 203
Indexp. 213
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