Cover image for Systems biology and synthetic biology
Title:
Systems biology and synthetic biology
Publication Information:
Hoboken, NJ : John Wiley & Sons, c2009
Physical Description:
xiii, 658 p. : ill. ; 25 cm.
ISBN:
9780471767787

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30000010230913 TP248.2 S97 2009 Open Access Book Book
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30000010334482 TP248.2 S97 2009 Open Access Book Book
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Summary

Summary

The genomic revolution has opened up systematic investigations and engineering designs for various life forms. Systems biology and synthetic biology are emerging as two complementary approaches, which embody the breakthrough in biology and invite application of engineering principles. Systems Biology and Synthetic Biology emphasizes the similarity between biology and engineering at the system level, which is important for applying systems and engineering theories to biology problems. This book demonstrates to students, researchers, and industry that systems biology relies on synthetic biology technologies to study biological systems, while synthetic biology depends on knowledge obtained from systems biology approaches.


Author Notes

Pengcheng Fu, PhD, is a professor in the Faculty of Chemical Science and Engineering, China University of Petroleum, Beijing. His research interests include: biofuels and bioenergy, metabolic engineering, functional genomics, genome-scale modeling, bioprocess control, metabolomics/metabolite profiling, systems biology, and synthetic biology.
Dr. Sven Panke is an associate professor and leader of the Bioprocess Laboratory at the Department of Mechanical and Process Engineering of the ETH Zurich, Switzerland. His main interests are the design of novel biocatalysts for applications in chemistry and pharmacy by synthetic biology approaches.


Table of Contents

Pengcheng FuMichael X. Wang and Huidong ShiXiu-Feng Wan and Dorothea K. ThompsonGordon S. OkimotoMitsuhiro ItayaAndrew R. Joyce and Bernhard Ø. PalssonDelphine Ropers and Hidde de Jong and Johannes GeiselmannJordi Vallverdú and Claes GustafssonGoutham Vemuri and Jens NielsenSang Yup Lee and Jin Sik Kim and Hongseok Yun and Tae Yong Kim and Seung Bum Sohn and Hyun Uk KimMatthias Heinemann and Sven PankeMarcus Graf and Thomas Schoedl and Ralf WagnerPhilipp Holliger and David LoakesWilson W. Wong and James C. LiaoDavid Greber and Martin FusseneggerHiroaki KitanoWenlong Cheng and Liang Ding and Hisakage Funabashi and Nokyoung Park and Soong Ho Um and Jianfeng Xu and Dan LuoGuangyi Wang and Juanita MathewsCliff HookerPengcheng Fu and Cliff Hooker
Forewordp. ix
Contributorsp. xi
1 Introductionp. 1
2 Basics of Molecular Biology, Genetic Engineering, and Metabolic Engineeringp. 9
3 High-Throughput Technologies and Functional Genomicsp. 67
4 Genomic Signal Processing of DNA Microarray Data for the Enhanced Prediction of Axillary Lymph Node Status of Breast Cancer Tumorsp. 115
5 Recombinant Genomes: Novel Resources for Systems Biology and Synthetic Biologyp. 155
6 In silico Genome-Scale Metabolic Models: The Constraint-Based Approach and its Applicationsp. 193
7 Mathematical Modeling of Genetic Regulatory Networks: Stress Responses in Escherichia colip. 235
8 Synthetic Life: Ethobricks for a New Biologyp. 273
9 Yeast as a Prototype for Systems Biologyp. 287
10 Construction and Applications of Genome-Scale in silico Metabolic Models for Strain Improvementp. 355
11 Synthetic Biology: Putting Engineering into Bioengineeringp. 387
12 Rationales of Gene Design and de novo Gene Constructionp. 411
13 Self-Replication in Chemistry and Biologyp. 439
14 The Synthetic Approach for Regulatory and Metabolic Circuitsp. 467
15 Synthetic Gene Networksp. 489
16 The Theory of Biological Robustness and its Implication to Cancerp. 529
17 Nucleic Acid Engineeringp. 549
18 Potential Applications of Synthetic Biology in Marine Microbial Functional Ecology and Biotechnologyp. 577
19 On Fundamental Implications of Systems and Synthetic Biologyp. 593
20 Outstanding Issues in Systems and Synthetic Biologyp. 615
Indexp. 647