Cover image for Methodologies for metabolomics : experimental strategies and techniques
Title:
Methodologies for metabolomics : experimental strategies and techniques
Publication Information:
Cambridge : Cambridge University Press, 2012
Physical Description:
xii, 627 p. : ill. (some col.) ; 26 cm.
ISBN:
9780521765909
Abstract:
"While most of the focus in "omics" science over the past decade has been on sequencing the human genome [1] or annotating the human proteome [2], there is another equally important component of the human body that has, until recently, been largely overlooked: the human metabolome. The human metabolome can be thought of as the complete collection of small molecule metabolites found in our bodies. These small molecules include such chemical entities as peptides, amino acids, nucleic acids, carbohydrates, organic acids, vitamins, minerals, food additives, drugs and just about any other chemical (with a molecular weight 1500 Da) that can be used, ingested or synthesized by humans. Metabolites act as the bricks and mortar of our cells. They serve as the building blocks for all of our macromolecules including proteins, RNA, DNA, carbohydrates, membranes and all other biopolymers that give our cells their structure and integrity. Metabolites also act as the fuel for all cellular processes, the buffers to help tolerate environmental insults and the messengers for most intra- and intercellular events. Together with the genome and the proteome, the human metabolome essentially defines who and what we are"--Provided by publisher

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30000010301134 QP171 M385 2013 Open Access Book Book
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Summary

Summary

Metabolomics, the global characterisation of the small molecule complement involved in metabolism, has evolved into a powerful suite of approaches for understanding the global physiological and pathological processes occurring in biological organisms. The diversity of metabolites, the wide range of metabolic pathways and their divergent biological contexts require a range of methodological strategies and techniques. Methodologies for Metabolomics provides a comprehensive description of the newest methodological approaches in metabolomic research. The most important technologies used to identify and quantify metabolites, including nuclear magnetic resonance and mass spectrometry, are highlighted. The integration of these techniques with classical biological methods is also addressed. Furthermore, the book presents statistical and chemometric methods for evaluation of the resultant data. The broad spectrum of topics includes a vast variety of organisms, samples and diseases, ranging from in vivo metabolomics in humans and animals to in vitro analysis of tissue samples, cultured cells and biofluids.


Table of Contents

1 Exploring the human metabolome by NMR spectroscopy and mass spectroscopyDavid S. Wishart
2 Methodological requirements for lipidomics researchKui Yang and Michael A. Kiebish and Richard W. Gross
3 Biological methods for metabolic researchArancha Cebrian and Laura Menchen and Elsa Sanchez-Lopez and Juan Casado-Vela and Santiago Diaz-Moralli and Marta Casceante and Teresa Gomez del Pulgar and Juan Carlos Lacal
4 Considerations in sample preparation, collection, and extraction approaches applied in microbial, plant, and mammalian metabolic profilingJ. William Allwood and Catherine L. Winder and Warwick B. Dunn and Royston Goodacre
5 MS-based methodologies for single-cell metabolite detection and identificationAnn M. Knolhoff and Peter Nemes and Stanislav S. Rubakhin
6 Direct metabolomics from tissues and cells: laser ablation electrospray ionization for small molecule and lipid characterizationAkos Vertes and Bindesh Shrestha and Peter Nemes
7 Bioinformatic approaches to process and annotate high-resolution mass spectrometry dataRalf Weber and Mark Viant
8 Approaches for natural product detection and structural elucidation using mass spectrometry with high mass accuracyIoanna Ntai and Neil L. Kelleher
9 Metabolomics using ion mobility mass spectrometryKimberly A. Kaplan and Herbert Hill
10 Metabolomics via biomedical mass spectrometry: from sampling to clinical applicationsBong Chul Chung and Man Ho Choi
11 Analytical techniques in metabolomics integrating NMR and chromatography withMS U. Braumann and M. Godejohann
12 NMR of CSF: the neurometabolomeFanny Mochel
13 NMR analysis and genetic metabolic disease UdoF. H. Engelke and Angelina Goudswaard and Eva Morava and Ron Wevers
14 NMR methods for metabolomic investigation of amniotic fluidAna M. Gil and Goncalo Graca
15 Chemometric methods in NMR-based body fluid analysisRon Wehrens and Udo Engelke
16 Lipid profiling in health and disease ChristinaE. Kostara and Eleni T. Bairaktari
17 NMR-based saliva metabolomics HanneChristine Bertram and Morten Rahr Clausen
18 Reproducible sample preparation and spectrum acquisition techniques for metabolic profiling of human tissues byH HR-MAS NMR Marital Pitto and F. M. Moussallieh and A. Imperiale and M. A. Benahmed and J. Detour and J. P. Bellocq and I. J. Namer and K. Elbayed
19 MR spectroscopy in investigating the cancer metabolome in preclinical model systemsMarie-France Penet and Zaver M. Bhujwalla and Kristine Glunde
20 Metabolomic magnetic resonance spectroscopy of human tissue: a comparison of in vivo and HR-MAS ex vivo techniquesGeoffery S. Payne and Yuen-Li Chung and Martin O. Leach
21 Phospholipidomics by P NMR spectroscopy of tissue extractsNorbert W. Lutz and Patrick J. Cozzone
22 C NMR for analysis of metabolic pathwaysCraig R. Malloy and Elizabeth Maher and Issac Marin-Valencia and Bruce Mickey and Ralph J. DeBerardinis and A. Dean Sherry
23 Hyperpolarized NMR spectroscopy - a new method for metabolomic researchRalph E. Hurd and Yi-Fen Yen and Albert Chen
24 Assignment strategies for NMR resonances in metabolomics researchTeresa W. M. Fan and rew N. Lane