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Cover image for Fundamentals of enzymology : the cell and molecular biology of catalytic proteins
Title:
Fundamentals of enzymology : the cell and molecular biology of catalytic proteins
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Edition:
3rd ed.
Publication Information:
Oxford : Oxford University Press, 1999
ISBN:
9780198502296
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30000010151238 QP601 P74 1999 Open Access Book Book
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Summary

Summary

Since the publication of the successful and popular second edition of Fundamentals of Enzymology in 1989 there has been a large increase in the knowledge of several aspects of enzymology, not least the rapid acceleration of structural characterization of enzymes and the development of the field of bioinformatics. This new edition places appropriate emphasis on the new knowledge and consolidates the strengths of the previous editions. As before, Fundamentals of Enzymology 3rd ed gives an all-round view of the field including enzyme purification and characterization, enzyme structure (including information on the web), enzyme kinetics, the mechanisms and control of enzyme action, enzyme folding, how enzymes act in vivo, enzyme synthesis and degradation, and also clinical and industrial applications of enzymology. Throughout the book, the integration of these themes is stressed.


Author Notes

Nicholas Price is at University of Stirling. Lewis Stevens is at University of Stirling.


Table of Contents

A note on unitsp. xv
List of abbreviationsp. xvii
Chapter 1 Introductionp. 1
1.1 Aims of this bookp. 1
1.2 Historical aspectsp. 1
1.3 Remarkable properties of enzymes as catalystsp. 4
1.4 Cofactorsp. 7
1.5 Nomenclature and classification of enzymesp. 8
1.6 The contents of this bookp. 13
Referencesp. 14
Chapter 2 The purification of enzymesp. 15
2.1 Introductionp. 15
2.2 Why isolate enzymes?p. 15
2.3 Objectives and strategy in enzyme purificationp. 16
2.4 Choice of sourcep. 17
2.5 Methods of homogenizationp. 20
2.6 Methods of separationp. 21
2.7 How to judge the success of a purification procedurep. 34
2.8 Examples of purification proceduresp. 36
2.9 Conclusions from the examples of enzyme purificationp. 43
Referencesp. 44
Chapter 3 The structure of enzymesp. 47
3.1 Introductionp. 47
3.2 The determination of M[subscript r]p. 48
3.3 The determination of amino-acid composition and primary structurep. 54
3.4 The determination of secondary and tertiary structurep. 75
3.5 The determination of quaternary structurep. 100
3.6 The unfolding and folding of enzymesp. 106
3.7 Concluding remarksp. 110
Referencesp. 111
Appendix 3.1p. 116
References for Appendix 3.1p. 117
Chapter 4 An introduction to enzyme kineticsp. 118
4.1 Outline of the chapterp. 118
4.2 How do we obtain kinetic data?p. 119
4.3 How do we analyse kinetic data?p. 121
4.4 Pre-steady-state kineticsp. 144
4.5 Concluding remarksp. 148
Referencesp. 148
Appendix 4.1p. 150
Appendix 4.2p. 151
Appendix 4.3p. 152
References for Appendicesp. 153
Chapter 5 The mechanism of enzyme actionp. 154
5.1 Introductionp. 154
5.2 Definition of the mechanism of an enzyme-catalysed reactionp. 154
5.3 Background to catalysisp. 155
5.4 Experimental approaches to the determination of enzyme mechanismsp. 162
5.5 Examples of enzyme mechanismsp. 177
5.6 Concluding comments on enzyme mechanismsp. 212
Referencesp. 212
Chapter 6 The control of enzyme activityp. 217
6.1 Introductionp. 217
6.2 Control of the activities of single enzymesp. 218
6.3 Control of metabolic pathwaysp. 237
6.4 Examples of control of metabolic pathwaysp. 249
6.5 Concluding remarksp. 266
Referencesp. 266
Appendix 6.1p. 270
Chapter 7 Enzymes in organized systemsp. 273
7.1 Introductionp. 273
7.2 Organized enzyme systemsp. 273
7.3 RNA polymerase from E. colip. 274
7.4 The occurrence and isolation of multienzyme proteinsp. 281
7.5 Phylogenetic distribution of multienzyme proteinsp. 282
7.6 Properties of multienzyme proteinsp. 283
7.7 Pyruvate dehydrogenase multienzyme complex and related systemsp. 285
7.8 Glycine decarboxylase multienzyme complexp. 294
7.9 The tryptophan synthase multienzyme complex from E. colip. 294
7.10 Carbamoyl phosphate synthase and the associated enzymes of the pyrimidine and arginine biosynthetic pathways in E. coli, fungi, and mammalian cellsp. 300
7.11 Multienzyme polypeptides: fatty-acid synthase and the arom complex (AROM enzyme)p. 304
7.12 Enzymes involved in DNA synthesisp. 315
7.13 The glycogen particlep. 315
7.14 Conclusionsp. 317
Referencesp. 317
Chapter 8 Enzymes in the cellp. 321
8.1 Introductionp. 321
8.2 Intracellular compartmentationp. 322
8.3 Compartmentation of metabolic pathwaysp. 333
8.4 Vectorial organization of enzymes associated with membranesp. 347
8.5 The concentrations of enzymes and substrates in vivop. 355
8.6 Conclusionsp. 366
Referencesp. 367
Chapter 9 Enzyme turnoverp. 370
9.1 Introductionp. 370
9.2 Kinetics of enzyme turnoverp. 371
9.3 Methods for measurement of rates of enzyme turnoverp. 373
9.4 Results from measurements of rates of enzyme turnoverp. 375
9.5 Possible correlations between the rates of turnover and the structure and function of enzymesp. 376
9.6 The mechanisms of protein degradationp. 377
9.7 The significance of enzyme turnoverp. 389
9.8 Other processes in which intracellular proteolysis is importantp. 394
9.9 Conclusionsp. 396
Referencesp. 396
Appendix 9.1p. 399
Chapter 10 Clinical aspects of enzymologyp. 400
10.1 Introductionp. 400
10.2 Determination of enzyme activities for clinical diagnosisp. 401
10.3 Clinical enzymology of liver diseasep. 404
10.4 Clinical enzymology of heart diseasep. 406
10.5 Other enzyme activities that become elevated in serum in diseasep. 408
10.6 The detection and significance of enzyme deficienciesp. 411
10.7 Enzyme inhibitors and drug designp. 415
10.8 The use of enzymes to determine the concentrations of metabolites of clinical importancep. 416
10.9 Enzyme therapyp. 424
10.10 Conclusionsp. 428
Referencesp. 428
Chapter 11 Enzyme technologyp. 430
11.1 Introductionp. 430
11.2 Use of microorganisms in brewing and cheesemakingp. 430
11.3 Use of microorganisms in the production of organic chemicalsp. 433
11.4 Use of isolated enzymes in industrial processesp. 433
11.5 Immobilized enzymesp. 440
Referencesp. 449
Appendix Enzymes referred to in Chapters 1-11p. 450
Indexp. 471
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