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Title:
Spectroscopy for the biological sciences
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Publication Information:
Hoboken, NJ : John Wiley & Sons, 2005
ISBN:
9780471713449

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30000004715508 QP519.9.S6 H35 2005 Open Access Book Book
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Summary

Summary

An introduction to the physical principles of spectroscopy and their applications to the biological sciences

Advances in such fields as proteomics and genomics place new demands on students and professionals to be able to apply quantitative concepts to the biological phenomena that they are studying. Spectroscopy for the Biological Sciences provides students and professionals with a working knowledge of the physical chemical aspects of spectroscopy, along with their applications to important biological problems.

Designed as a companion to Professor Hammes's Thermodynamics and Kinetics for the Biological Sciences, this approachable yet thorough text covers the basic principles of spectroscopy, including:
* Fundamentals of spectroscopy
* Electronic spectra
* Circular dichroism and optical rotary dispersion
* Vibration in macromolecules (IR, Raman, etc.)
* Magnetic resonance
* X-ray crystallography
* Mass spectrometry

With a minimum of mathematics and a strong focus on applications to biology, this book will prepare current and future professionals to better understand the quantitative interpretation of biological phenomena and to utilize these tools in their work.


Author Notes

GORDON G. HAMMES is University Distinguished Service Professor of Biochemistry at Duke University Medical Center in Durham, North Carolina. He is author of Thermodynamics and Kinetics for the Biological Sciences (also from Wiley) and more than 200 research articles.


Table of Contents

Preface
1 Fundamentals of Spectroscopy
Introduction
Quantum Mechanics
Particle in a Box Properties of Waves
References
Problems
2 X-Ray Crystallography
Introduction
Scattering of X Rays by a Crystal
Structure Determination
Neutron Diffraction
Nucleic Acid Structure
Protein Structure
Enzyme Catalysis
References
Problems
3 Electronic Spectra
Introduction
Absorption Spectra
Ultraviolet Spectra of Proteins
Nucleic Acid Spectra
Prosthetic Groups
Difference Spectroscopy
X-Ray Absorption Spectroscopy
Fluorescence and Phosphorescence
RecBCD: Helicase Activity Monitored by Fluorescence
Fluorescence Energy Transfer: A Molecular Ruler
Application of Energy Transfer to Biological Systems
Dihydrofolate Reductase
References
Problems
4 Circular Dichroism, Optical Rotary Dispersion, and Fluorescence Polarization
Introduction
Optical Rotary Dispersion
Circular Dichroism
Optical Rotary Dispersion and Circular Dichroism of Proteins
Optical Rotation and Circular Dichroism of Nucleic Acids
Small Molecule Binding to DNA
Protein Folding
Interaction of DNA with Zinc Finger Proteins
Fluorescence Polarization
Integration of HIV Genome into Host Genome
¿-Ketoglutarate Dehyrogenase
References
Problems
5 Vibrations in Macromolecules
Introduction
Infrared Spectroscopy
Raman Spectroscopy
Structure Determination with Vibrational Spectroscopy Resonance Raman Spectroscopy
Structure of Enzyme-Substrate Complexes
References
Problems
6 Principles of Nuclear Magnetic Resonance and Electron Spin Resonance
Introduction
NMR Spectrometers
Chemical Shifts
Spin-Spin Splitting
Relaxation Times
Multidimensional NMR
Magnetic Resonance Imaging
Electron Spin Resonance
References
Problems
7 Applications of Magnetic Resonance to Biology
Introduction
Regulation of DNA Transcription
Protein-DNA Interactions
Dynamics of Protein Folding
RNA Folding
Lactose Permease
Conclusion
References
8 Mass Spectrometry
Introduction
Mass Analysis
Tandem Mass Spectrometry (MS/MS).
Ion Detectors
Ionization of the Sample
Sample Preparation/Analysis
Proteins and Peptides
Protein Folding
Other Biomolecules
References
Problems
Appendices
1 Useful Constants and Conversion Factors
2 Structures of the Common Amino Acids at Neutral pH
3 Common Nucleic Acid Components
Index